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ITR Filing Mistakes That Can Lead to Section 139(9) Defective Return Notices

Updated: May 2

Under Section 139(9) of the Income Tax Act, 1961, a return is deemed "defective" when it contains errors, inconsistencies, or missing information that prevent proper processing. The Income Tax Department issues a defective return notice to taxpayers when such discrepancies are detected. Upon receiving this notice, taxpayers must rectify the errors within 15 days, or their return may be treated as invalid, leading to further tax liabilities and penalties.

A defective return notice is typically issued for errors such as using the wrong ITR form, mismatches in tax credits, failure to report certain income, or missing documentation. Addressing these defects on time ensures compliance and prevents unnecessary legal or financial consequences.

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Importance of Accurate ITR Filing

Filing an Income Tax Return (ITR) correctly is crucial for avoiding legal complications and ensuring smooth tax processing. Common mistakes can lead to delays in refunds, additional scrutiny, or even penalties. The Income Tax Department has been enhancing its automated systems to cross-verify income details, tax credits, and documentation, making it essential for taxpayers to ensure accuracy in their filings.

Errors in tax filings can also lead to the loss of carry-forward benefits for losses, incorrect tax liability calculations, and financial penalties under Sections 234F and 271F. By understanding and avoiding common mistakes, taxpayers can ensure seamless compliance and avoid unnecessary hassles with tax authorities.


Common ITR Filing Mistakes Leading to Section 139(9) Defective Return Notices


Incorrect or Incomplete ITR Form Selection

Choosing the correct ITR form is fundamental to accurate filing. Different forms are designed for different categories of taxpayers based on their income source, exemptions, and deductions claimed. A mismatch between the taxpayer’s income type and the selected ITR form can lead to a defective return notice.


Common errors in ITR form selection:

  1. Using ITR-1 instead of ITR-2 or ITR-3: Salaried individuals with capital gains, multiple income sources, or business/professional income often select the wrong form.

  2. Business owners using ITR-1 or ITR-2: Self-employed individuals or businesses should use ITR-3, ITR-4, or ITR-5, depending on their structure.

  3. Non-residents filing ITR-1: ITR-1 is only for resident individuals; NRIs should use ITR-2 or ITR-3.


Impact of incorrect form selection:

  • ITR processing delays or rejection

  • Revised return requirement, increasing compliance burden

  • Potential penalties for misreporting

  • Mismatched Tax Payments or TDS Claims

A significant reason for defective return notices is discrepancies between the tax deducted at source (TDS) claims and reported income. The Income Tax Department cross-verifies declared income with Form 26AS, Form 16 (for salaried employees), and Form 16A (for other taxpayers) to identify mismatches.


Common mistakes leading to mismatches:

  • Claiming TDS credits that do not match reported income.

  • Not declaring interest income for which TDS has been deducted.

  • Incorrect tax computation, leading to underpayment of self-assessment or advance tax.


How mismatches impact taxpayers:

  • Increased scrutiny and potential penalties

  • Refund processing delays or denials

  • Additional tax demand notices under Sections 143(1) or 156

  • Missing Financial Details or Documentation

Taxpayers often receive defective return notices due to incomplete financial disclosures or missing supporting documents for claimed deductions.


Common errors include:

  1. Unreported income sources: Interest from savings accounts, fixed deposits, dividends, and rental income are often overlooked.

  2. Unsupported deduction claims: Deductions under Sections 80C, 80D, and 80E must be backed by proper documentation such as investment proofs, insurance premium receipts, and loan statements.

  3. Business taxpayers not submitting financial statements: Filers using ITR-3, ITR-4, or ITR-5 must include balance sheets and profit & loss statements if applicable.


Consequences of missing details:

  • Tax department may reject deductions, increasing tax liability

  • Possible reassessment of return leading to penalties

  • Higher chances of scrutiny and audit selection

  • Personal Detail Errors

Mistakes in personal details, particularly PAN, Aadhaar, and bank account information, are another frequent cause of defective return notices. The Income Tax Department uses these details to verify identity and process refunds.


Common errors include:

  1. PAN and Aadhaar name mismatches: If the name in the ITR does not match the name on PAN or Aadhaar, verification may fail.

  2. Incorrect IFSC code or bank account number: This can delay or prevent refunds from being credited.

  3. Using an outdated email or phone number: Taxpayers may miss important notices and OTPs required for verification.


Impact of personal detail errors:

  • E-verification failures leading to return invalidation

  • Refund processing delays due to incorrect bank details

  • Inability to receive important tax notices and communications

  • Non-Verification of ITR

Filing an ITR is not complete until it is verified. The Income Tax Department allows verification through multiple methods, including Aadhaar OTP, net banking, and sending a signed ITR-V form via post. If a return remains unverified beyond 30 days of filing, it is considered invalid.


Consequences of non-verification:

  • Return is treated as 'not filed', leading to potential penalties.

  • Taxpayers may have to file a belated return with penalties under Section 234F.

  • Loss of carry-forward losses and deductions.

  • Late or No Response to Defective Notices

Once a defective return notice is issued under Section 139(9), taxpayers have 15 days to respond. If the issue is not rectified within this period, the return may be deemed invalid, requiring refiling along with potential penalties.


Key aspects of responding to defective notices:

  • Understanding the defect and making necessary corrections

  • Submitting a revised return with accurate details

  • Seeking an extension if unable to comply within 15 days


Consequences of non-response:

  • Return is considered void, leading to tax liabilities as if no return was filed

  • Loss of tax benefits such as carry-forward of losses

  • Possible penalties and interest on unpaid taxes


How to Rectify a Defective Return

Receiving a defective return notice under Section 139(9) of the Income Tax Act can be concerning, but rectifying the issue is a straightforward process if done within the stipulated time. The Income Tax Department provides an online mechanism to respond to such notices through the e-filing portal. Below are the steps to correct the defects and ensure compliance.


Accessing the e-Filing Portal

To respond to a defective return notice, follow these steps:

  1. Log in to the Income Tax e-Filing Portal

  2. Visithttps://www.incometax.gov.in

  3. Enter your PAN/Aadhaar as the user ID and provide your password and captcha to log in.

  4. Go to ‘Response to Notice u/s 139(9)’ in the e-filing portal

  5. Go to the ‘Pending Actions’ tab.

  6. Click on ‘E-Proceedings’ and then select ‘Response to Notice u/s 139(9)’.

  7. The system will display the defective return notice along with details of the errors identified.

  8. Download the Defective Notice

  9. Carefully review the notice to understand the defects mentioned.

  10. Download the communication to refer to the defect codes and the corrective actions required.


Agreeing or Disagreeing with Defects

Once you review the notice, you have two options:


A. Agreeing with the Defects (Revising ITR)

If the errors in your return are valid, follow these steps:

  1. Select ‘Agree with Defects’

  2. A prompt will appear confirming that a revised return needs to be filed.

  3. Download the JSON file (if applicable)

  4. If you filed your ITR using the offline utility, download the JSON file and update the necessary corrections before re-uploading.

  5. File a Revised Return

  6. Prepare and submit a corrected return under the appropriate ITR form.

  7. Ensure that all errors highlighted in the notice are rectified.

  8. After submission, e-verify the return to complete the process.


B. Disagreeing with the Defects (Submitting an Explanation)

If you believe the notice was issued incorrectly, you can dispute it by providing supporting documents:

  1. Select ‘Disagree with Defects’

  2. Provide a written explanation for why you believe the return is not defective.

  3. Attach relevant supporting documents such as Form 16, Form 26AS, bank statements, or other proofs.

  4. Submit the Response

  5. After reviewing the explanation, click ‘Submit’.

  6. The Income Tax Department will review the response and may either accept your justification or request further clarifications.


3.3. Meeting the Correction Deadline

Timely action is crucial when responding to a defective return notice.


Deadline for Submission

  • The default response time is 15 days from the date of issue of the notice.

  • If additional time is required, taxpayers can request an extension through the e-filing portal.


Consequences of Missing the Deadline

Failure to respond within the stipulated time frame can lead to:

  1. Invalidation of ITR: The return is treated as not filed, resulting in loss of tax benefits and potential penalties.

  2. Loss of carry-forward benefits: Deductions and losses (such as capital losses) cannot be carried forward.

  3. Penalties and interest: Late fees under Section 234F and interest on unpaid taxes may apply.

To avoid complications, it is advisable to respond promptly and ensure the corrections are submitted within the deadline.


Recent Trends and Updates

Surge in Defective Notices Due to Stricter Scrutiny

  • In recent years, there has been a significant increase in defective return notices due to enhanced scrutiny by the Income Tax Department.

  • Automated checks and AI-driven systems now flag discrepancies faster than before, leading to a higher volume of notices being issued.


Automated Checks for Mismatches and Missing Details

  • The government has implemented automated verification tools that cross-check ITRs with:

  • Form 26AS (TDS and advance tax details)

  • AIS (Annual Information Statement)

  • PAN-Aadhaar linkages

  • Pre-filled tax forms

  • Any mismatches between reported income and these official records trigger a Section 139(9) notice.

These changes indicate that taxpayers must exercise greater caution while filing ITRs, ensuring that details are correctly reported and verified before submission.


Conclusion

Filing an accurate Income Tax Return (ITR) is crucial to avoid Section 139(9) defective return notices. Common errors like incorrect ITR form selection, mismatched tax details, or missing verification can lead to such notices, but timely correction can prevent penalties. With increasing scrutiny and automated checks, taxpayers must ensure accuracy, cross-check income details with Form 26AS, and respond promptly to any notices. Staying proactive and addressing defects within the deadline ensures smooth tax compliance and avoids unnecessary complications.


FAQs

1. What is a defective return under Section 139(9)?

A defective return under Section 139(9) of the Income Tax Act, 1961, is an ITR that contains errors, omissions, or inconsistencies that make it incomplete or inaccurate. The Income Tax Department issues a notice to the taxpayer, requiring corrections within a specified time frame to avoid the return being treated as invalid.


2. How do I know if my ITR is defective?

You will receive a notice from the Income Tax Department under Section 139(9) via your registered email or on the e-filing portal. The notice specifies the errors in your return and provides instructions on how to rectify them. You can check for defective return notices under the e-Proceedings section of the Income Tax e-filing portal.


3. What happens if I don’t respond to a defective return notice?

If you fail to respond to a defective return notice within the given timeframe, your ITR will be treated as invalid, meaning it will be considered as if it was never filed. This can result in penalties, interest on unpaid taxes, and loss of carry-forward tax benefits such as capital losses.


4. How can I correct errors in my ITR after receiving a notice?

To rectify a defective return:

  • Log in to the Income Tax e-filing portal.

  • Navigate to e-Proceedings > Response to Notice u/s 139(9).

  • Review the defects listed and either accept or dispute them.

  • If you agree, file a revised ITR with corrections.

  • If you disagree, submit an explanation with supporting documents.

  • Submit the response within the deadline to avoid invalidation of your return.


5. Can I disagree with the defects mentioned in the notice?

Yes, if you believe the notice was issued incorrectly, you can choose to disagree with the defects. In such cases, you must submit a detailed written explanation along with relevant supporting documents to justify why the return is correct. The Income Tax Department will review your response and decide accordingly.


6. What is the deadline to respond to a defective return notice?

You must respond to a defective return notice within 15 days from the date of issuance. However, if you require additional time, you can request an extension by submitting a written request through the Income Tax portal before the deadline.


7. What are the common reasons for receiving a Section 139(9) notice?

Some common mistakes that lead to a defective return notice include:

  • Filing the incorrect ITR form based on your income source.

  • Claiming TDS credits that do not match Form 26AS.

  • Failing to report all sources of income (e.g., interest, rental, capital gains).

  • Incorrect personal details such as PAN-Aadhaar mismatches.

  • Submitting an ITR without mandatory financial statements for business income.

  • Failing to verify the ITR within 30 days of filing.


8. Can I get an extension if I miss the 15-day response period?

Yes, in some cases, the Income Tax Department may grant an extension if you submit a formal request explaining the delay before the deadline expires. If no response is submitted, your return will be deemed invalid, and you may need to refile with penalties.


9. How do I ensure my ITR is accurate to avoid future notices?

To prevent defective return notices:

  • Use the correct ITR form for your income type.

  • Cross-check income details with Form 16, Form 26AS, and AIS/TIS reports.

  • Ensure all deductions and exemptions are supported by valid proofs.

  • Double-check PAN, Aadhaar, and bank account details before submission.

  • Verify your ITR within 30 days of filing to avoid it being considered invalid.


10. Does failing to verify my ITR lead to a defective return?

Yes, if you do not e-verify your return within 30 days of filing, it will be treated as not filed. In such cases, you may receive a defective return notice, and your ITR may become invalid, requiring you to file a fresh return along with applicable late fees or penalties.


11. Will I be penalized if my return is deemed defective?

If your return is declared defective and becomes invalid, you may face:

  • Late filing penalties under Section 234F (up to ₹5,000).

  • Interest charges on outstanding tax under Sections 234A, 234B, and 234C.

  • Loss of carry-forward benefits, such as capital losses and business losses.

  • Possible tax scrutiny due to repeated filing errors.


12. Where can I check the status of my defective return correction?

You can check the status of your defective return correction by:

  • Logging into the Income Tax e-filing portal.

  • Navigating to My Account > View e-Filed Returns/Forms.

  • Clicking on the relevant Assessment Year and selecting Response to Notice u/s 139(9).

  • Checking whether your response is under review, accepted, or rejected.


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