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Form 16 vs 26AS Mismatch Income Tax Notice: How TaxBuddy Resolves Employee Cases

  • Writer: Nimisha Panda
    Nimisha Panda
  • 5 days ago
  • 8 min read

A mismatch between Form 16 and Form 26AS is one of the most common reasons salaried individuals receive income tax notices, particularly under Section 143(1)(a). This happens when the TDS shown in Form 16 does not match the tax credit reflected in Form 26AS, usually due to errors or delays from the employer’s side. Identifying the discrepancy early prevents incorrect tax demands. Platforms like TaxBuddy simplify this process by reconciling both documents accurately and guiding employees on the corrective steps needed to fix the mismatch.

Table of Contents

What Causes a Form 16 vs 26AS Mismatch?

A mismatch occurs when the Tax Deducted at Source shown in Form 16 does not align with the tax credit appearing in Form 26AS. Form 16 reflects the salary paid and TDS deducted by the employer, whereas Form 26AS captures tax credits only after the employer deposits TDS and files their TDS return accurately. Any disparity between what the employer reports and what appears in the central tax database results in a mismatch. This typically leads to adjustments during ITR processing or triggers an intimation under Section 143(1)(a), requiring clarification from the employee. Since the mismatch originates at the deductor level, timely verification is essential to avoid unnecessary tax demands or refund delays.


Common Employer Errors Leading to Income Tax Notices

Employer-related mistakes form the bulk of mismatch cases. Delayed or non-deposit of TDS is the most frequent issue; the employer may deduct tax from salary but fail to deposit it within statutory timelines. Inaccurate PAN reporting in quarterly TDS returns causes genuine employee tax credits to be mapped to the wrong PAN. Incorrect challan details, wrong assessment year, or errors in quoting TDS amounts create further inconsistencies. Employers may also report gross salary in Form 26AS without reflecting exemptions such as HRA or LTA, resulting in apparent disparities when compared with Form 16. Even minor clerical mistakes in Form 24Q filings ripple into major compliance issues for employees.


Form 16 vs 26AS Mismatch Income Tax Notice: Actions Employees Must Take

Once a mismatch notice arrives, employees must begin by checking the exact difference between Form 16, Form 26AS, and salary records. Verifying each quarter’s TDS entry helps identify whether the issue lies in missing deposits or incorrect reporting. If the employer made an error, the next step is requesting them to revise their quarterly TDS return (Form 24Q). This is the only way missing or incorrect entries are corrected in the department’s system. If the notice demands additional tax, the mismatch must be clarified with proof of TDS deduction using payslips and Form 16. When the employer has corrected the error, a rectification request may be filed on the portal to ensure proper tax credit is granted and the notice is resolved.


How TaxBuddy Resolves Form 16 vs 26AS Mismatch Cases

TaxBuddy approaches mismatch cases using a structured and technology-backed process designed specifically to protect employee interests. The system imports Form 16, Form 26AS, and AIS automatically, highlighting discrepancies in TDS amounts, challan details, or reporting errors across quarters. This allows employees to understand the source of the mismatch instantly.


Once the error is identified, TaxBuddy provides a guided communication plan for employees to reach out to their employer with clarity on what needs revision in Form 24Q. If a notice under Section 143(1)(a) has arrived, TaxBuddy prepares the response, attaching Form 16, payslips, and explanations in the proper format. For cases requiring revised returns or rectification requests under Section 154, TaxBuddy handles the process end-to-end. This ensures that valid TDS deductions are recognised and employees are not burdened with unwarranted tax liability.


Legal Relief for Employees When Employer Fails to Deposit TDS

Courts across India have consistently held that employees cannot be penalised for deductor-side failures. When an employer deducts tax from salary but does not deposit it or reports it incorrectly, the responsibility lies entirely with the employer. Judicial rulings based on Section 199 reinforce that once TDS is deducted, it must be treated as tax paid on behalf of the employee. Therefore, if Form 16 proves TDS deduction, tax credit cannot be denied merely because it does not appear in Form 26AS. These rulings become crucial when responding to notices, and TaxBuddy incorporates them into detailed submissions, ensuring employees receive credit for taxes already deducted from their income.


Preventing Future Form 16 and 26AS Mismatches with TaxBuddy

Avoiding mismatches requires consistent monitoring, not just annual checks during filing season. Employees can prevent most issues by comparing Form 16, payslips, and quarterly TDS updates in Form 26AS. TaxBuddy simplifies this by automatically cross-matching all available data and identifying inconsistencies before the return is filed. The platform flags missing challans, incorrect TDS amounts, and discrepancies related to PAN or assessment year errors.


Employees also benefit from TaxBuddy’s alerts, which highlight delays in employer TDS deposits or sudden changes in reported salary figures. This proactive approach reduces the likelihood of receiving mismatch notices. Early detection ensures corrections can be initiated with the employer while the financial year is still open for revisions, resulting in smoother tax filing and faster refund processing.


Conclusion

A mismatch between Form 16 and Form 26AS may appear minor, but it has serious consequences during return processing, including tax demands and delayed refunds. Most errors stem from employer-side reporting issues, making it important to identify the source of the mismatch quickly and act before the ITR is processed. TaxBuddy’s automated reconciliation and expert-driven assistance streamline the entire resolution process, ensuring employees receive correct TDS credit and timely support in responding to notices. For anyone looking for assistance in tax filing, it ishighly recommended to download the TaxBuddy mobile appfor a simplified, secure, and hassle-free experience.


FAQs

Q1. Does TaxBuddy offer both self-filing and expert-assisted plans for ITR filing, or only expert-assisted options?

TaxBuddy provides both self-filing and expert-assisted options to suit different taxpayer needs. The self-filing system offers guided steps, pre-filled data imports, error checks, and automated suggestions, making it suitable even for beginners. For situations involving mismatches, notices, capital gains, multiple income sources, or TDS disputes, the expert-assisted plan ensures a tax professional handles the entire filing process. This includes reviewing forms, reconciling discrepancies, and responding to department queries. Both options prioritise accuracy, compliance, and a smooth filing experience.


Q2. Which is the best site to file ITR?

While the Income Tax Department’s portal is the official website for filing returns, many taxpayers prefer platforms that simplify data collection and prevent errors. TaxBuddy ranks high due to its AI-supported features, clean design, one-click document import, and automatic reconciliation of Form 16, Form 26AS, and AIS. It reduces mistakes commonly seen in manual filing and offers expert help for complex cases. As a result, it has become a reliable choice among salaried individuals, freelancers, and professionals who want a secure and seamless filing experience.


Q3. Where to file an income tax return?

Income tax returns can be filed directly on the government’s e-filing portal or through trusted third-party platforms. Many individuals choose TaxBuddy because it removes the stress of manual data entry and potential mismatches. With automated TDS checks, pre-filled form support, and a user-friendly approach, TaxBuddy ensures that filings are accurate and compliant. Its secure submission system integrates smoothly with the Income Tax Department’s platform, ensuring that the final return is filed correctly without technical hurdles.


Q4. What are the main causes of a Form 16 and 26AS mismatch?

A mismatch typically arises due to employer-side errors or delays. Common causes include late deposit of TDS, incorrect PAN entry in Form 24Q, errors in challan numbers or TDS amounts, wrong assessment year selection, or incomplete quarterly returns. Sometimes, Form 26AS shows gross salary while Form 16 reflects taxable salary after exemptions, creating confusion during cross-verification. Any of these inconsistencies may trigger an income tax notice or adjustment during ITR processing, which is why early reconciliation is essential.


Q5. Will the mismatch affect refund processing?

Yes. The Income Tax Department relies heavily on Form 26AS and AIS for verification. If the TDS shown in Form 16 does not appear in Form 26AS, the system may reduce or block the refund until the employer corrects the TDS entry. Refund delays continue until the mismatch is resolved, either through employer correction or a formal response supported by documents. TaxBuddy assists in identifying the reason for the delay and preparing the required submission to ensure the refund is processed quickly once the tax credit reflects accurately.


Q6. What should employees do if the employer entered incorrect PAN in Form 24Q?

Incorrect PAN reporting is a frequent mistake that prevents TDS from mapping to the employee’s Form 26AS. In such cases, the employer must revise the quarterly TDS return by correcting the PAN in Form 24Q. Employees should notify their HR or payroll team immediately and request this correction with proper documentation. TaxBuddy helps employees understand what needs to be corrected, provides communication templates, and tracks when the corrected entry appears in Form 26AS. This ensures the tax credit becomes available for ITR processing or notice resolution.


Q7. Can an employee be asked to pay extra tax for an employer’s mistake?

Employees should not be penalised for errors committed by the employer. Courts and tribunal rulings have consistently stated that once TDS is deducted from salary, it must be treated as tax paid on behalf of the employee, regardless of whether the employer deposited it or reported it correctly. If a notice demands additional tax due to a mismatch, employees can submit Form 16, payslips, and salary records to prove TDS deduction. TaxBuddy prepares these detailed submissions to ensure the rightful tax credit is granted and that employees do not bear the burden of employer-side lapses.


Q8. How long does a revised TDS return take to reflect in Form 26AS?

After the employer files a corrected Form 24Q, updates usually reflect in Form 26AS within 7–10 working days. During high-volume filing periods, updates may take up to two or three weeks. If the correction still doesn’t appear, the employer may need to verify challan status or recheck the submission on TRACES. TaxBuddy monitors the correction timeline and alerts employees once the updated TDS entry becomes visible for accurate filing or rectification.


Q9. Does TaxBuddy help draft responses to Section 143(1)(a) notices?

Yes. A notice under Section 143(1)(a) often arises when the system identifies mismatches in TDS claims, deductions, or income details. TaxBuddy reviews the notice, analyses the mismatch, and prepares a precise and compliant response. This includes attaching Form 16, payslips, bank proof of salary credit, or any supporting documentation needed. The goal is to ensure the department accepts the legitimate tax credit and removes unwarranted demands. The expert team handles the process end-to-end to avoid further complications.


Q10. Is filing a revised ITR necessary after the mismatch correction?

A revised return is required only under specific conditions. If the original ITR incorrectly claimed higher TDS or was filed before the employer corrected the error, revising the return may be necessary to align the details. However, if the return was correct and the mismatch existed only due to employer reporting errors, a rectification request may be enough. TaxBuddy evaluates each case and advises the appropriate step—revised return or rectification—to ensure smooth processing without unnecessary refiling.


Q11. Does mismatch only affect TDS, or can salary figures also differ?

Both situations can occur. Sometimes, Form 26AS displays the gross salary reported by the employer before exemptions such as HRA or LTA are applied. Meanwhile, Form 16 reflects taxable salary after exemptions and deductions. This difference is normal and usually not a cause for concern unless the TDS amounts differ. The real issue arises when the TDS in Form 16 does not match the tax credit in Form 26AS. TaxBuddy helps interpret these differences and ensures that employees understand which figures are relevant for ITR filing.


Q12. How can employees prevent mismatches in future years?

Preventing mismatches requires periodic monitoring instead of waiting until tax season. Employees should check quarterly updates in Form 26AS, verify whether TDS deductions appear correctly, and confirm that employers deposit TDS on time. Maintaining accurate HR records and verifying PAN details also reduces mistakes. TaxBuddy strengthens this process through automated reconciliation, early alerts for missing entries, and pre-filing data checks. This ensures that mismatches are caught before filing the return, preventing notices and refund delays in future years.


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